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Computational antimicrobial peptide design and evaluation against multidrug-resistant clinical isolates of bacteria.

J Biol Chem.. 2018-03; 
Nagarajan D, Nagarajan T, Roy N, Kulkarni O, Ravichandran S, Mishra M, Chakravortty D, Chandra N.
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Peptide Synthesis ...All peptides synthesized for this study were procured from GenScript, Inc. 20 mg of all 17 NN2 (10), NN2_shuf* (4), and NN2_R* (3) family peptides ... Get A Quote

摘要

There is a pressing need for new therapeutics to combat multidrug- and carbapenem-resistant bacterial pathogens. This challenge prompted us to use a long short-term memory (LSTM) language model to understand the underlying grammar, i.e. the arrangement and frequencies of amino acid residues, in known antimicrobial peptide sequences. According to the output of our LSTM network, we synthesized 10 peptides and tested them against known bacterial pathogens. All of these peptides displayed broad-spectrum antimicrobial activity, validating our LSTM-based peptide design approach. Our two most effective antimicrobial peptides displayed activity against multidrug-resistant clinical isolates of Escherichia coli, Acinetob... More

关键词

LSTM; antibiotic resistance; antimicrobial peptide (AMP); computational biology; drug design; drug resistance
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