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Role of simple descriptors and applicability domain in predicting change in protein thermostability.

PLoS ONE. 2018; 
McGuinnessKenneth N,PanWeilan,SheridanRobert P,MurphyGrant,CrespoAleja
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Mutagenesis Services The genes for each of the GK mutants were produced by site directed mutagenesis (GenScript, Piscataway, NJ, USA) using GK-RD3 as the template dna Get A Quote

摘要

The melting temperature (Tm) of a protein is the temperature at which half of the protein population is in a folded state. Therefore, Tm is a measure of the thermostability of a protein. Increasing the Tm of a protein is a critical goal in biotechnology and biomedicine. However, predicting the change in melting temperature (dTm) due to mutations at a single residue is difficult because it depends on an intricate balance of forces. Existing methods for predicting dTm have had similar levels of success using generally complex models. We find that training a machine learning model with a simple set of easy to calculate physicochemical descriptors describing the local environment of the mutation performed as we... More

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