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Codon optimization of the adenoviral fiber negatively impacts structural protein expression and viral fitness.

Sci Rep. 2016; 
VillanuevaEneko,Martí-SolanoMaria,FillatCris
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Codon Optimization … The AdFO genome was generated by the following steps: The codon-optimized version of the adenoviral fiber, containing short flanking sequences complementary to wild type adenovirus (purchased from GenScript) was digested using Hpa1 and MfeI restriction enzymes and … Get A Quote

摘要

Codon usage adaptation of lytic viruses to their hosts is determinant for viral fitness. In this work, we analyzed the codon usage of adenoviral proteins by principal component analysis and assessed their codon adaptation to the host. We observed a general clustering of adenoviral proteins according to their function. However, there was a significant variation in the codon preference between the host-interacting fiber protein and the rest of structural late phase proteins, with a non-optimal codon usage of the fiber. To understand the impact of codon bias in the fiber, we optimized the Adenovirus-5 fiber to the codon usage of the hexon structural protein. The optimized fiber displayed increased expressi... More

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