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Intrinsic conformational dynamics of the HIV-1 genomic RNA 5'UTR.

Proc. Natl. Acad. Sci. U.S.A.. 2019-05; 
BrighamBenjamin S,KitzrowJonathan P,ReyesJoshua-Paolo C,Musier-ForsythKarin,MunroJam
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摘要

The highly conserved 5' untranslated region (5'UTR) of the HIV-1 RNA genome is central to the regulation of virus replication. NMR and biochemical experiments support a model in which the 5'UTR can transition between at least two conformational states. In one state the genome remains a monomer, as the palindromic dimerization initiation site (DIS) is sequestered via base pairing to upstream sequences. In the second state, the DIS is exposed, and the genome is competent for kissing loop dimerization and packaging into assembling virions where an extended dimer is formed. According to this model the conformation of the 5'UTR determines the fate of the genome. In this work, the dynamics of this proposed co... More

关键词

5′ untranslated region,HIV-1,RNA conformational dynamics,in-gel FRET,single-molecule
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