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Large-scale remodeling of a repressed exon ribonucleoprotein to an exon definition complex active for splicing.

Elife. 2016; 
WongpaleeSomsakul Pop,VashishtAjay,SharmaShalini,ChuiDarryl,WohlschlegelJames A,BlackDougl
Products/Services Used Details Operation
Catalog Antibody , rabbit anti-RAVER1 (A303-939A, Bethyl Laboratories, Montgomery, Texas), mouse anti-MBNL1 (LS-B4372, LifeSpan Biosciences, Seattle, Washington), rabbit anti-DDX5/17 (Genscript, China), mouse anti-phophorylated SR proteins (clone mAb104 (Roth et al., 1991). Note: anti-IgM secondary antibody must be used to probe mAb104) Get A Quote

摘要

Polypyrimidine-tract binding protein PTBP1 can repress splicing during the exon definition phase of spliceosome assembly, but the assembly steps leading to an exon definition complex (EDC) and how PTBP1 might modulate them are not clear. We found that PTBP1 binding in the flanking introns allowed normal U2AF and U1 snRNP binding to the target exon splice sites but blocked U2 snRNP assembly in HeLa nuclear extract. Characterizing a purified PTBP1-repressed complex, as well as an active early complex and the final EDC by SILAC-MS, we identified extensive PTBP1-modulated changes in exon RNP composition. The active early complex formed in the absence of PTBP1 proceeded to assemble an EDC with the eviction of ... More

关键词

RNA binding protein,biochemistry,evolutionary biology,gene regulation,genomics,human,ribonucleoprotein,spli
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