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Insights into the Dynamics and Dissociation Mechanism of a Protein Redox Complex Using Molecular Dynamics.

J Chem Inf Model. 2017; 
HollingsworthScott A,NguyenBrian D,ChreifiGeorges,ArceAnton P,PoulosThom
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Codon Optimization The sequence of cytochrome c from L. major (strain Friedlin) was obtained from GenBank.(14) LmCytc was synthesized by GenScript, with optimized codons for Escherichia coli expression, into the construct pBPCYC1, replacing yeast cytochrome c.(15) … Get A Quote

摘要

Leishmania major peroxidase (LmP) is structurally and functionally similar to the well-studied yeast Cytochrome c peroxidase (CCP). A recent Brownian dynamics study showed that L. major Cytochrome c (LmCytc) associates with LmP by forming an initial complex with the N-terminal helix A of LmP, followed by a movement toward the electron transfer (ET) site observed in the LmP-LmCytc crystal structure. Critical to forming the active electron transfer complex is an intermolecular Arg-Asp ion pair at the center of the interface. If the dissociation reaction is effectively the reverse of the association reaction, then rupture of the Asp-Arg ion pair should be followed by movement of LmCytc back toward LmP helix A.... More

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