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Codon Optimization> | … The Codon Adaptation Index (CAI) and GC content of optimized DNA were assessed by the GenScript server (https://www.genscript.com/tools/rare-codon-analysis). Finally, the multi-epitope vaccine sequence was inserted into the pET-30a (+) vector by the SnapGene tool … | Get A Quote |
The present study aimed to work out a peptide-based multi-epitope vaccine against the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). We predicted different B-cell and T-cell epitopes by using the Immune Epitopes Database (IEDB). Homology modeling of the construct was done using SWISS-MODEL and then docked with different toll-like-receptors (TLR4, TLR7, and TLR8) using PatchDock, HADDOCK, and FireDock, respectively. From the overlapped epitopes, we designed five vaccine constructs C1-C5. Based on antigenicity, allergenicity, solubility, different physiochemical properties, and molecular docking scores, we selected the vaccine construct 1 (C1) for further processing. Docking of C1 with TLR4, TLR7, ... More