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Experimentally Consistent Simulation of Aβ Peptides with a Minimal NMR Bias

J Phys Chem B. 2020; 
Dilnoza B Amirkulova, Maghesree Chakraborty, Andrew D White
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Peptide Synthesis … a maximum entropy guarantee. MATERIALS AND METHODS Experimental Details Aβ21-30 peptide was purchased from GenScript USA Inc. Peptide purity was 96.2%, as specified by the supplier. D2O was purchased from ACROS OrganicsTM . NMR samples … Get A Quote

摘要

Misfolded amyloid peptides are neurotoxic molecules associated with Alzheimer's disease. The Aβ peptide fragment is a decapeptide fragment of the complete Aβ42 peptide which is a hypothesized cause of Alzheimer's disease via amyloid fibrillogenesis. Aβ is investigated here with a combination of NMR (nuclear magnetic resonance) spectroscopy experiments and molecular dynamics simulations with experiment directed simulation (EDS). EDS is a maximum entropy biasing method that augments a molecular dynamics simulation with experimental data (NMR chemical shifts) to improve agreement with experiments and thus accuracy. EDS molecular dynamics shows that the Aβ monomer has a β turn stabilized by the following inter... More

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