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Novel Escherichia coli active site dnaE alleles with altered base and sugar selectivity

Mol Microbiol. 2021-06; 
Alexandra Vaisman, Krystian Łazowski, Martin A M Reijns, Erin Walsh, John P McDonald, Kristiniana C Moreno, Dominic R Quiros, Marlen Schmidt, Harald Kranz, Wei Yang, Karolina Makiela-Dzbenska, Roger Woodgate
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Gene Synthesis … ε subunits (dnaE, holE, and dnaQ, respectively) were codon optimized for expression in E. coli and chemically synthesized (Genscript). The θ-subunit was untagged, whilst ε was His … S759, were individually changed to the 19 other natural amino acids (Genscript). We then … Get A Quote

摘要

The Escherichia coli dnaE gene encodes the α-catalytic subunit (pol IIIα) of DNA polymerase III, the cell's main replicase. Like all high-fidelity DNA polymerases, pol III possesses stringent base and sugar discrimination. The latter is mediated by a so-called "steric gate" residue in the active site of the polymerase that physically clashes with the 2'-OH of an incoming ribonucleotide. Our structural modeling data suggests that H760 is the steric gate residue in E.coli pol IIIα. To understand how H760 and the adjacent S759 residue help maintain genome stability, we generated DNA fragments in which the codons for H760 or S759 were systematically changed to the other nineteen naturally occurring amino acids a... More

关键词

Mutagenesis, Replicase, Replication fidelity, Ribonucleotide Excision Repair, Ribonucleotide Incorporation, Steric Gate
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