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Entropic pressure controls the oligomerization of the Vibrio cholerae ParD2 antitoxin

Acta Crystallogr D Struct Biol. 2021-06; 
Gabriela Garcia-Rodriguez, Yana Girardin, Alexander N Volkov, Ranjan Kumar Singh, Gopinath Muruganandam, Jeroen Van Dyck, Frank Sobott, Wim Versées, Daniel Charlier, Remy Loris
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摘要

ParD2 is the antitoxin component of the parDE2 toxin-antitoxin module from Vibrio cholerae and consists of an ordered DNA-binding domain followed by an intrinsically disordered ParE-neutralizing domain. In the absence of the C-terminal intrinsically disordered protein (IDP) domain, V. cholerae ParD2 (VcParD2) crystallizes as a doughnut-shaped hexadecamer formed by the association of eight dimers. This assembly is stabilized via hydrogen bonds and salt bridges rather than by hydrophobic contacts. In solution, oligomerization of the full-length protein is restricted to a stable, open decamer or dodecamer, which is likely to be a consequence of entropic pressure from the IDP tails. The relative positioning of succ... More

关键词

ParD2, Vibrio cholerae, intrinsically disordered proteins, oligomer interface, protein oligomers, protein–DNA interactions, quaternary structure, toxin–antitoxin module, transcription regulation
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