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The structure and mechanism of action of a distinct class of dicistrovirus intergenic region IRESs

Nucleic Acids Res .. 2023-07; 
Irina S Abaeva , Christina Young , Reid Warsaba , Nadiyah Khan , Lan Vy Tran , Eric Jan , Tatyana V Pestova , Christopher U T Hellen
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Polyclonal Antibody Services The vector pET15b-His6-SERBP1 for expression in E. coli of Nterminally His6-tagged human SERBP1 (NCBI Ref. seq. NM 015640.4) was made by inserting appropriate DNA between NdeI/BamHI sites of pET15b (GenScript, Piscataway, NJ, USA)./Cells were probed by rabbit -CrPV VP2 (1:500, Genscript) in 5% bovine serum albumin (BSA) in PBS, and then with secondary goat -rabbit Texas Red IgG (1:200; Life Technologies) in 5% BSA solution./ Blots were probed with rabbit polyclonal antibody against CrPV ORF2 (VP2) (1:1000, Genscript) or mouse anti-S2 Tubulin (1:1000; Santa Cruz). Get A Quote
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摘要

Internal ribosomal entry sites (IRESs) engage with the eukaryotic translation apparatus to promote end-independent initiation. We identified a conserved class of ∼150 nt long intergenic region (IGR) IRESs in dicistrovirus genomes derived from members of the phyla Arthropoda, Bryozoa, Cnidaria, Echinodermata, Entoprocta, Mollusca and Porifera. These IRESs, exemplified by Wenling picorna-like virus 2, resemble the canonical cricket paralysis virus (CrPV) IGR IRES in comprising two nested pseudoknots (PKII/PKIII) and a 3'-terminal pseudoknot (PKI) that mimics a tRNA anticodon stem-loop base-paired to mRNA. However, they are ∼50 nt shorter than CrPV-like IRESs, and PKIII is an H-type pseudoknot that lacks the S... More

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