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Filling up the heme pocket stabilizes apomyoglobin and speeds up its folding.

J Phys Chem B.. 2014-01; 
Goodman JS, Chao SH, Pogorelov TV, Gruebele M. Department of Chemistry, University of Illinois, Urbana, Illinois 61801, United States.
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摘要

Wild type apomyoglobin folds in at least two steps: The ABGH core rapidly, followed much later by the heme-binding CDEF core. We hypothesize that the evolved heme-binding function of the CDEF core frustrates its folding: it has a smaller contact order and is no more complex topologically than ABGH, and thus it should be able to fold faster. Therefore filling up the empty heme cavity of apomyoglobin with larger, hydrophobic side chains should significantly stabilize the protein and increase its folding rate. Molecular dynamics simulations allowed us to design four different mutants with bulkier side chains that increase the native bias of the CDEF region. In vitro thermal denaturation shows that the mutations in... More

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