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Co-crystal structures of HIV TAR RNA bound to lab-evolved proteins show key roles for arginine relevant to the design of cyclic peptide TAR inhibitors

J Biol Chem. 2020-10; 
Sai Shashank Chavali , Sachitanand M Mali , Jermaine L Jenkins , Rudi Fasan , Joseph E Wedekind
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Peptide Synthesis which included an acetylated N terminus and an amidated C terminus. The peptide was HPLCpurified by the manufacturer (Genscript, Inc.). Get A Quote

摘要

RNA-protein interfaces control key replication events during the HIV-1 lifecycle. The viral trans-activator of transcription (Tat) protein uses an archetypal ARM (arginine-rich motif) to recruit the host positive transcription elongation factor b (pTEFb) complex onto the viral trans-activation response (TAR) RNA, leading to activation of HIV transcription. Efforts to block this interaction have stimulated production of biologics designed to disrupt this essential RNA-protein interface. Here, we present four co-crystal structures of lab-evolved TAR-binding proteins (TBPs) in complex with HIV-1 TAR. Our results reveal that high-affinity binding requires a distinct sequence and spacing of arginines within a specif... More

关键词

RNA binding protein; RNA structure; RNA-protein interaction; X-ray crystallography; cyclic peptide; drug discovery; human immunodeficiency virus (HIV); isothermal titration calorimetry (ITC); peptide chemical synthesis; surface plasmon resonance (SPR). Published under license by The American Society for Biochemistry and Molecular Biology, Inc.
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